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毛竹PeCPP基因家族成员鉴定及生物信息学分析

Identification and Bioinformatics Analysis of PeCPP Gene Family Members in Phyllostachys edulis

  • 摘要: CPP(cysteine-rich polycomb-like protein)是一种重要的植物转录因子,具有显著的抗逆性,广泛分布于各类植物。本研究旨在深入了解毛竹Phyllostachys edulis耐寒、耐旱等多种逆境适应机理,为毛竹培育提供分子遗传育种理论基础。基于生物信息学技术,采用HMMER 3.0(E<10−5)模型检索分析毛竹全基因组数据,共鉴定出17个PeCPP家族成员,均为不稳定蛋白,且亚细胞定位预测显示其主要分布于细胞核内。通过分析蛋白保守结构域和保守多肽模体,发现PeCPP在进化过程中保持高度保守性。通过MEGA 7.0软件构建毛竹与水稻Oryza sativa、拟南芥Arabidopsis thaliana 的CPP基因家族系统发育树,进一步证实毛竹与水稻作为单子叶植物具有更近的亲缘关系。启动子顺式元件分析表明,PeCPP启动子含有多种激素响应元件,推测其表达可能通过调控激素水平来应对逆境胁迫。本研究揭示了毛竹CPP家族成员的特征及其潜在功能,为理解毛竹逆境适应机制提供了重要的分子遗传学参考。

     

    Abstract: CPP is an important plant transcription factor and is widely distributed across various plants due to its strong stress resistance. To better understand the mechanism of stress tolerance, such as cold and drought resistance in Phyllostachys edulis, and to provide a molecular genetics foundation for its breeding, the whole genome data of P. edulis were analyzed by HMMER 3.0 on the basis of bioinformatics in this study. Seventeen CPP family members were identified, all of which were classified as unstable proteins that localized in the nucleus by subcellular localization prediction. Analyses of conserved protein domains and peptide motifs revealed that PeCPP maintained high conservation throughout long-term evolution. Phylogenetic analysis of the CPP gene family in P. edulis, Oryza sativa, and Arabidopsis thaliana by MEGA7.0 further confirmed a closer genetic relationship between P. edulis and O. sativa, which were both monocotyledons. Promoter cis-element analysis identified that PeCPP promoters harbored various hormone-responsive elements, suggesting that PeCPP gene expression may respond to diverse environmental stress by regulating hormone secretion levels. This study elucidates characteristics and potential functions of the CPP gene family members in P. edulis, providing important molecular genetic resource for understanding its stress adaptation mechanism.

     

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